Content

  • About Me
  • Real-time MRI
  • Image Reconstruction
  • Source Code
  • Publications
  • Programming Library and Software Toolbox for Compressed Sensing and Parallel Imaging

    Martin Uecker, Patrick Virtue, Frank Ong, Mark J. Murphy, Marcus T. Alley, Shreyas S. Vasanawala, Michael Lustig

    The high complexity of advanced algorithms presents challenges for research and clinical application of new reconstruction methods. While researchers need flexible and interactive tools, clinical evaluation and application require robust and highly efficient implementations. Here, we present a framework for image reconstruction, which consists of a programming library and a toolbox of command-line programs. The library provides common operations on multi-dimensional arrays, Fourier and wavelet transforms, as well as generic implementations of selected iterative optimization algorithms. The command-line tools provide direct access to basic operations on multi-dimensional arrays as well as efficient implementations of selected iterative reconstruction algorithms.

    Figure: Sagittal section of a human knee acquired with an 3D-FSE sequence and reconstructed with L1-ESPIRiT.

    Usage Examples

    The toolbox can be used in combination with Matlab/Octave. In our examples the tools are called directly from Matlab which is used for image display.

    Download

    C/C++ source code (for Linux and MacOS X): recon_v0.1.2.tgz

    Examples: examples_2013-04-07.tgz (5.4 MB)

    References

    Martin Uecker, Patrick Virtue, Frank Ong, Mark J. Murphy, Marcus T. Alley, Shreyas S. Vasanawala, Michael Lustig, Software Toolbox and Programming Library for Compressed Sensing and Parallel Imaging, ISMRM Workshop on Data Sampling and Image Reconstruction, Sedona 2013.

    Martin Uecker, Peng Lai, Mark J. Murphy, Patrick Virtue, Michael Elad, John M. Pauly, Shreyas S. Vasanawala, and Michael Lustig. ESPIRiT - An Eigenvalue Approach to Autocalibrating Parallel MRI: Where SENSE meets GRAPPA. Magnetic Resonance in Medicine. early view (2013)