Curriculum Vitae (pdf).
Research
Ten percent of proteins from experimental protein interaction data form homologous modular structures between human and Drosophila. Note that 60 percent of proteins from these same interactomes are homologous between human and Drosophila.
- Hodgkinson L, Karp RM (2012) Algorithms to detect multiprotein modularity conserved during evolution. IEEE/ACM Trans. on Computational Biology and Bioinformatics 9:1046-1058. (PubMed, full-text)
- Hodgkinson L, Karp RM (2011) Algorithms to detect multiprotein modularity conserved during evolution. ISBRA 2011. LNBI 6674:111-122. (full-text)
EasyProt is a software architecture for computational biology that utilizes the strengths of cloud computing.
- Hodgkinson L, Rosa J, Brewer EA (2012) Parallel software architecture for experimental workflows in computational biology on clouds. PPAM 2011. LNCS 7204:281-291. (full-text)
VieProt is a dynamic visualization tool to visualize multiprotein modules and associated statistics.
- Hodgkinson L, Kong N. Visualizing conserved multiprotein modularity with a dynamic force-directed layout. Manuscript in preparation.
Teaching
- Graduate Student Instructor, CS 270:
Combinatorial Algorithms and Data Structures,
University of California-Berkeley, Spring 2010.
- Graduate Student Instructor, CS 270:
Combinatorial Algorithms and Data Structures,
University of California-Berkeley, Fall 2008.
- Graduate Student Instructor, CS 70:
Discrete Mathematics and Probability Theory, University of
California-Berkeley, Spring 2008.
- Graduate Student Instructor, CS 70:
Discrete
Mathematics
and Probability Theory, University of California-Berkeley, Fall
2007.
- Teaching Assistant, COMS 4236: Computational
Complexity, Columbia University, Spring 2007.
- Teaching Assistant, COMS 3261: Computability and Models of
Computation, Columbia University, Spring 2007.
- Teaching Assistant, CSEE 4824: Computer Architecture, Columbia
University, Fall 2006.
- Teaching Assistant, COMS 3139: Honors Data Structures and
Algorithms, Columbia University, Spring 2006.
- Teaching Assistant, COMS
3261: Computability and Models of Computation, Columbia University,
Fall 2005.
- Instructor, CS
10051: Introduction to Computer Science, Kent State University,
Fall 2004.
- Lab Instructor, CS 10051: Introduction to Computer Science, Kent
State University, Spring 2004.
- Teaching Assistant, FRCL 174: Defining America: Family Values and
Culture Wars, Hiram College, Fall 2000.
- Teaching Assistant, CPSC 160: Computer Literacy, Hiram College,
Summer 2000.
Contact Information
Email: luqman at berkeley dot edu
Offices: 615 Soda Hall, University of California, Berkeley
Suite 619, International Computer Science Institute
