Evangelos Georganas, Aydın Buluç, Jarrod Chapman, Leonid Oliker, Daniel Rokhsar and Katherine Yelick, "merAligner: A Fully Parallel Sequence Aligner". 29th IEEE International Parallel & Distributed Processing Symposium (IPDPS 2015), Hyderabad, INDIA, May 2015.
I am a TA for CS170 in Fall 2014. My office hours are: Mon 3:30pm-5pm in 283E Soda, Thu 2:30pm-4pm in 283H Soda.
Communication Avoiding and Overlapping for Numerical Linear Algebra
(UCB/EECS-2012-65, May 2012)
Evangelos Georganas, Jorge González-Domínguez, Edgar Solomonik, Yili Zheng, Juan Touriño and Katherine Yelick PDF (573k)
High Performance Parallel Gibbs Sampling for IRT Models (ParLab Winter 2013 Retreat) PDF
A Communication-Avoiding Algorithm for Direct N-Body Interactions (ParLab Summer 2012 Retreat) PDF
Communication Avoiding and Overlapping for Numerical Linear Algebra (ParLab Summer 2012 Retreat) PDF
Extending SEJITS to Leverage Cloud Computing Resources (ParLab Winter 2012 Retreat) PDF