This software computes the multi-locus match probability in a finite population (ie. the joint probability of identity by descent of two randomly sampled haplotypic gametes) under the Wright-Fisher and Moran models (see [1]).

Source Code:

Moran model: moran_mp.tgz

Wright-Fisher model: wright_fisher_mp.tgz

You will need g++ and nauty to compile this.

Installation and execution instructions are in the README files.

[1] Bhaskar, A. and Song, Y.S. Multi-locus match probability in a finite population: A fundamental difference between the Moran and Wright-Fisher models. Proceedings of  ISMB 2009, Bioinformatics,  25  (2009) i187-i195. [Abstract] [PDF]